Toure started just once in the Premier League in his final season at the Etihad, when he captained the side against Brighton in the penultimate game of the season.
The Spaniard has now responded to the accusations, telling Catalan station TV3: "It's a lie and he knows it".
And following the conclusion of City's record breaking success in the league, Toure issued a forthright interview about Guardiola.
"We have been together during two years".
"They were lies and he knows it".
Toure, who also played under Guardiola at Barcelona before the Catalan sold him to City, pointed to the treatment his compatriot Wilfried Bony received when Guardiola arrived at City.
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"When you see that he's had problems with Africans wherever he's been in the past, you wonder".
"When the day comes that he picks a team featuring five Africans - and not naturalised Africans - I promise I will send him a cake!" He never told me face to face'.
"At a time when English clubs are spending huge sums of money on players, I officially declare that Yaya is ready to move to any top-six English club as a free agent with a salary of £1 per week", he said.
Former Blaugrana coach Guardiola remarked: "Now I am less intoxicated about what happens here". It was a fantastic era where I was taking on the world and we took it on together, with some incredible players, a young president [Joan Laporta], Txiki [Begiristain, now City's director of football].
"It was a generation of brutal players and the best player in the world. When I stop coaching, you will find me playing golf".